Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
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Updated
May 28, 2024 - Nextflow
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Health Check ✔ is a Machine Learning Web Application made using Flask that can predict mainly three diseases i.e. Diabetes, Heart Disease, and Cancer.
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
This project is all about a Machine Learning based Medical Test web app which makes predictions about various diseases using the concept of machine learning.
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
Training and evaluating a variational autoencoder for pan-cancer gene expression data
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
Building classifiers using cancer transcriptomes across 33 different cancer-types
P-NET, Biologically informed deep neural network for prostate cancer classification and discovery
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Fast and accurate gene fusion detection from RNA-Seq data
A Slicer extension to provide a GUI around pyradiomics
Personal Cancer Genome Reporter (PCGR)
BioDynaMo is a high-performance and modular, agent-based simulation platform.
It was built a web application as a step forward in building a 3D recommendation system.
A collection of small-sample, high-dimensional microarray data sets to assess machine-learning algorithms and models.
Detect and visualize target mutations by scanning FastQ files directly
Backend Server for CIViC Project
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